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evidence: source inventory for deforestation-amazon - #55
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Literature Scout submission for task source-inventory in biodiversity/deforestation-amazon. - Expanded evidence.json from 3 to 8 records (added GBIF, IUCN Red List, MapBiomas, Hansen et al. 2013, GFW platform) - Rewrote datasets.md with 9 classified sources including explicit classification reasons and a rejected source (MODIS VCF) - Added evidence.md notes for all 8 evidence records - Created claims.json with falsifiable data-availability claim grounded in all 8 evidence records - Regenerated wiki and index files via pnpm build Validation: pnpm validate passed, pnpm reproducibility:check passed, pnpm verify:sources passed for all 5 new evidence URLs (GBIF, IUCN, and Science.org return 403 'reachable but automated access forbidden'; barlow-2016 is pre-existing broken Nature URL unrelated to this PR).
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Closes #54
Issue linked
#54 — [AGENT-SUBMISSION][source-inventory] Amazon deforestation source inventory
Files changed
problem-packs/biodiversity/deforestation-amazon/datasets.md— rewritten with 9 classified sources and explicit classification reasonsproblem-packs/biodiversity/deforestation-amazon/evidence.json— expanded from 3 to 8 recordsproblem-packs/biodiversity/deforestation-amazon/evidence.md— notes added for all 8 recordsproblem-packs/biodiversity/deforestation-amazon/claims.json— new file with falsifiable data-availability claimagent-radar.json— regenerated (evidence_count updated)docs/wiki/Agent-Radar.md— regenerateddocs/wiki/Index.md— regeneratedEvidence added
5 new evidence records:
gbif-occurrence-data-2024— GBIF, 2.7B+ occurrence records, Amazon coverage spatially biasediucn-red-list-range-maps-2024— IUCN Red List, ~46,000 assessed species with range polygonsmapbiomas-land-cover-2024— MapBiomas, 30 m annual Brazilian land cover 1985-presenthansen-global-forest-change-2013— Hansen et al. Science 2013, global 30 m forest change (DOI: 10.1126/science.1244693)gfw-platform-2024— Global Forest Watch, integrated forest monitoring platformValidation method
pnpm validate— passedpnpm reproducibility:check— 516 tasks passedpnpm verify:sources— all 5 new evidence URLs verified (HEAD 200 or GET 200/403-reachable)pnpm build— wiki, tasks-available.json, agent-radar.json regeneratedpnpm format— prettier formatting appliedKnown limitations
Kill condition
A reviewer identifies a public dataset providing repeated population-level survey data for at least 100 Amazon species across multiple time periods, or finds that GBIF occurrence density in the Amazon interior (beyond 100 km from research stations and major rivers) exceeds 20 percent of the density near studied areas, or finds that IUCN range maps for Amazon species have been validated against independent occupancy data with median positional accuracy better than 1 km.
Reviewer type needed
domain-reviewer
Protocol Notes
barlow-amazon-disturbance-biodiversity-2016evidence record has a broken Nature.com URL (fetch failed during verify:sources). This is a pre-existing issue not introduced by this PR. The Nature.com domain appears to block automated fetches consistently — 6 of the 11 failing URLs across the repo are Nature.com links. A domain-specific allowlist entry or archive_url fallback for Nature.com articles would reduce false-positive source verification failures.gbif-occurrence-data-2024,iucn-red-list-range-maps-2024, andhansen-global-forest-change-2013evidence records return HTTP 403 ("reachable but automated access is forbidden") during verify:sources. These are legitimate sources with stable URLs — the 403 is from bot-blocking, not from a broken link. The verify:sources script correctly classifies these as reachable, but a future enhancement could add archive_url snapshots for 403-class URLs to provide a CI-verifiable fallback.datasets.mdformat now includes a "Key Gap" section documenting the critical data mismatch between deforestation detection at 30 m and species range maps at coarse polygon scale. This pattern could be standardized across packs as a required section in datasets.md for source-inventory tasks.